If you’re not yet using reaper I highly advise you to try it out. I run it on debian and it works extremely well. For noise reduction you can use reafir which is one of the built in plugins of reaper. Here is a link with basic tutorial on how to do noise reduction with it.
https://www.homebrewaudio.com/9603/reafir-madness-hidden-noise-reduction-tool-in-reaper/
You could have a look at munin. It’s incredibly simple but effective. Quite easy to write your own plugins for if you’re missing some data. http://munin-monitoring.org/